This post may contain affiliate links. Please read our disclosure policy.
Muffins are easy to grab on the way out the door; they keep well for a few days, and my kids will actually eat them without complaining. The problem is that most muffin recipes lean more toward dessert than breakfast, which is not always what I am going for. I started keeping a list of healthy breakfast muffins I could rotate through without having to rethink the same few options.

18 Healthy Muffin Recipes
This recipe collection pulls together 18 of them. There are oatmeal muffins, bran muffins, banana muffins, apple cinnamon oatmeal cups, pistachio muffins, banana nut muffins, carrot cake muffins, and a handful that work especially well for kids. A good number of them are low sugar muffins, sweetened with fruit, dates, or a small amount of maple syrup instead of refined sugar. If you are not sure where to start, these healthy breakfast muffin recipes give you a solid range to work from




Bran Muffins
Fuel your morning with a wholesome bran muffin, packed with the goodness of dates and added sweetness of maple syrup.










Healthy Muffins for Kids
These healthy muffins for kids are great for grab-and-go breakfast, lunchbox or snacks. They’re filled with wholesome ingredients for a nutritious tasty treat.








Double Chocolate Chip Muffins
This Double Chocolate Chip Muffins recipe is only 150 calories per muffin. It’s loaded with cocoa and chocolate chips – a real treat for chocolate lovers!


Banana Blueberry Muffins Recipe
These easy one-bowl banana blueberry muffins made with ripe bananas, fresh blueberries, and Greek yogurt. An easy homemade muffin recipe with 10 minutes of prep.


Cranberry Muffin Recipe
These cranberry muffins are made with fresh cranberries, sliced almonds, and lemon zest. Everything comes together easily and bakes in under 30!








Protein Muffin Recipe
Protein muffins made with oats, cottage cheese, eggs, and protein powder, with 8 grams of protein per muffin and a moist, bakery-style texture.


Tips for Making Muffins
- Don’t over mix your batter when making muffins. This can cause the gluten to over develop, and your muffins will be flat and chewy rather than light and fluffy. The dry ingredients should stirred in just until combined.
- Customize your muffins. It’s super easy to make your muffins exactly how you like them with simple add-ins. Chocolate chips, chopped nuts, dried and fresh fruits can be folded into the batter before you place them into muffin cups.
- Allow the muffins to cool before removing them from the pan. It’s tempting, but when you give it time, the steam that condenses around the muffins actually makes it easier to remove from the pan. And then don’t forget to cool them on the wire rack for about 15 minutes.
- Incorporate healthier ingredients. You’ll notice that many of these healthy breakfast muffin recipes contain ingredients like Greek yogurt and applesauce. These better-for-you ingredients add moisture and creaminess without the additional fat.
- Don’t let add-ins sink to the bottom. Berries, nuts, chocolate chips, and other add-ins tend to sink to the bottom. Give them a light dusting of flour to help them stay put in the batter.
How To Store Leftovers
- Store at room temperature. Freshly baked muffins can be stored in an airtight container for 1 to 2 days at room temperature if they don’t contain perishable ingredients like dairy or fresh fruit.
- Store in the refrigerator. After that, transfer them to the fridge for up to 4-5 days. Place a piece of paper towel in the bottom of your container to absorb any moisture and ensure the container is sealed tightly.
- To freeze muffins. For longer storage, muffins can be frozen. Wrap each muffin individually in plastic wrap and place them in a sealed container or zip-top bag to prevent freezer burn. Freeze for up to 3 months. Thaw at room temperature for a few hours before enjoying.
- To reheat muffins. Some muffins taste best when warm, especially if they have been previously frozen. To refresh the texture of the muffins, you can briefly warm them in a small toaster oven at low temperature for 5 minutes or until warmed through.
- Avoid moisture. To prevent the muffins from becoming soggy, avoid storing them in a container that traps moisture, and if you see condensation forming inside the container, transfer them to a different container. Be sure you add a piece of paper towel to absorb any moisture.
FAQs
Getting your muffins stuck to the muffin tin can be annoying but you can avoid that by using non-stick muffin tin or line the cups with paper or silicone liners. Alternatively, you can also lightly grease the cups with cooking spray or a small amount of oil.
